This is a standalone version of the jmol viewer used in the It's a bit difficult to script and isn't as fast as Pymol. Lots of options for rendering, movie making and Pros Free - if you have a protein crystallography or Cryo-EM lab it will already be installed. Very powerful platform that comes with the CCP4 suite. You count as such a thing - otherwise you pay. Also it seems to only beįree for 'teachers and students' and you have to register and see if Pros Lots of options for rendering, movie making andĬons I personally find the layout and syntax of commandsĬounterintuitive but your mileage may vary. The compromise of great ease of use is typically some lossĪ powerful platform but you may have to pay. And I'm biasedĬons As this is a browser-based system with JMol at itsĬore, don't expect to do any deep analysis or simulations
Key point here is there is almost no learning curve. Simple step by step approach to producing a high quality figure. This is a web-based wrapper for Jmol/JSmol described below. These tools, so take my descriptions with a large grain of salt!įor a more exhaustive list of tools, visit the RCSB Here I am giving the briefest possible outline of each tool asĪll of them, even the simplest ones, have a large number of features Hopefully you can try the options below and discover which ones do The best tool for you will be determined by what you want toĭo. Started with some of the tools I've used that I think were pretty Manipulating and analysing protein structures and models. There are a large number of tools available for visualising, What software can I use to visualise/analyse/manipulate my protein We stopped using SCOP entries when the original SCOP database was no longer being updated (in 2010), so any models starting with a "d" are at least that old. The chain in the entry and the final character tells you which SCOP domain the entry is derived from. Otherwise the reading is the same - a four character code for the PDB entry, one character for The "_" (underscore character) would tell you which SCOP domain thisĬhain is in, but we gave up using this in 2010!Īn initial "d" means that this is a domain from a SCOP entry, but The initial "c" indicates this protein is a whole chain taken from the PDB, with PDB identifier 1ut0 and chain identifier A. What does the code for each solution mean?Įach solution in the list has a code something like "c1ut0A_" or How can I model the structural effect of point What does the code for each solution mean?ģ. Protein Homology/analog Y Recognition Engine V 2.0ġ.
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